NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114962_10277444

Scaffold Ga0114962_10277444


Overview

Basic Information
Taxon OID3300009151 Open in IMG/M
Scaffold IDGa0114962_10277444 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)944
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002267Metagenome / Metatranscriptome576Y

Sequences

Protein IDFamilyRBSSequence
Ga0114962_102774441F002267AGGAMAITIGPGIEIGPGVTVTQGFLPSLTLVYDLDAANYAALPANGSTVAGTGSYAITVSNTTSRLSWGSANGGVFSFTGTGSSTTDTMYGGPNYVTGQSYSVFMAYQRTTGIDGRLLNTQNEASKDWLMGLYNGNPNTFYPNGSVNLPATGADLVWHFGWATLNISTGVGQLWIATNTQPTTFTYTATNGAFGGFNQLRLFSRAAGTEPQTANVGFVKVYNGVLTTADIQGLYAQYKSRFGY

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